PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000010.1.g00009.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 715aa    MW: 79403.9 Da    PI: 6.2978
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000010.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-181912582798
                                     ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                     +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF +   +++ l+v+++r
  FANhyb_rscf00000010.1.g00009.1 191 Q--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR--GDNGDLRVGIRR 258
                                     2..234458************************************************3..377888***998 PP
2Auxin_resp106.43.1e-35284363183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkW 79 
                                     a+ha++t++ F v+Y+Pr+  s+F+v+++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d++p +W +SkW
  FANhyb_rscf00000010.1.g00009.1 284 ASHAVATQTLFVVYYKPRT--SQFIVSLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISP-QWADSKW 359
                                     789***************6..9***********************************************99.******* PP

                      Auxin_resp  80 rsLk 83 
                                     rsLk
  FANhyb_rscf00000010.1.g00009.1 360 RSLK 363
                                     **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-31126273IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-15131258No hitNo description
SMARTSM010195.8E-13132260IPR003340B3 DNA binding domain
PfamPF023628.7E-17185258IPR003340B3 DNA binding domain
SuperFamilySSF1019364.84E-24187287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.335197260IPR003340B3 DNA binding domain
PfamPF065076.7E-33284363IPR010525Auxin response factor
PfamPF023093.0E-8587642IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-14600682No hitNo description
PROSITE profilePS5174524.683606687IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MMAHQAGSYS QPNISDKGVD VLYPELWKAC AGPLVEVPRL KERVFYFPQG HMEQLEASTT  60
TNPEVNQVIP RFNLPSKILC QVMHVQLLAE QDTDEVYAQI TLIPEANQST EPTSPDPDEC  120
LSEPERPKVY SFCKVLTASD TSTHALMSIM SLVWFAERKV VPSSLPWEGK VNGNEISREV  180
FIPMFGNDMT QATPTQELVA KDLHGYEWRF KHIFRGQPRR HLLTTGWSTF VTSKRLSAGD  240
SFVFLRGDNG DLRVGIRRLA RQQSSMPSSV ISSQSMHVGV LATASHAVAT QTLFVVYYKP  300
RTSQFIVSLN KYLEAVNNKF SVGMRFKMRF EGEDAPERRF SGTIIGLEDI SPQWADSKWR  360
SLKVNSSTWL LALVVQWDES ASIPRPDRVS PWEIEPYVAS IPASLSQSTV LKNKRPRLVP  420
ETPAPDTASS ITWHDVTQLS GAAEGQRSED HVALNHQQAD IISISSCISR TQTDGGWLSS  480
PTVEDSKTGP AWPLFSGYST PTSLKPKNDL MLDHVEKRKK TETAAGCLIF GVDFSSNPKS  540
AHSVEKPSPQ PIIASTGTTE GQVSISVEAE SDQKSDLSKA SKESKAQLQV SPKETLSKQS  600
SSASTRSRVK VQMQGIAVGR AVDLTMLEGY EQLIVELEEM FDIKGQIGPR KKWEIVFTDD  660
EGDMMLAGDD PWLEFCNMVR RIFICSSQDV KKISAGRKRL SMSSLEVEGT VTSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1492039617354Auxin response factor 1
4ldw_A1e-1492039617354Auxin response factor 1
4ldw_B1e-1492039617354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300502.10.0PREDICTED: auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P6P3W50.0A0A2P6P3W5_ROSCH; Auxin response factor
STRINGXP_004300502.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9