PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000009.1.g00018.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12140.1 Da    PI: 10.6091
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000009.1.g00018.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.7e-272473150
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                    k+ien s rqvtfskRr g++KKA EL vLCdaevaviifs+tgklye s
  FANhyb_rscf00000009.1.g00018.1 24 KKIENLSSRQVTFSKRRGGLFKKAGELAVLCDAEVAVIIFSQTGKLYEQS 73
                                    68*********************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.01E-281682IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.8241676IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-381675IPR002100Transcription factor, MADS-box
CDDcd002654.40E-361782No hitNo description
PRINTSPR004041.2E-271838IPR002100Transcription factor, MADS-box
PfamPF003191.1E-252571IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-273853IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-275374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MVGNDRERSS SHTRKMGRGK IEIKKIENLS SRQVTFSKRR GGLFKKAGEL AVLCDAEVAV  60
IIFSQTGKLY EQSSTRLFMV LDLGFSVPVP MSLSPRDSCF GVVRTQENV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-191681166MEF2C
5f28_B9e-191681166MEF2C
5f28_C9e-191681166MEF2C
5f28_D9e-191681166MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296220.22e-44PREDICTED: MADS-box transcription factor 23-like
SwissprotQ9LT935e-27AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A2P6REF67e-39A0A2P6REF6_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004296220.12e-33(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.29e-30AGAMOUS-like 71