PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000009.1.g00012.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 340aa    MW: 38085.8 Da    PI: 6.4361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000009.1.g00012.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-183178148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  FANhyb_rscf00000009.1.g00012.1 31 RGPWTVEEDLALMNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 78
                                    89********************************************97 PP
2Myb_DNA-binding51.23e-1684127146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  FANhyb_rscf00000009.1.g00012.1  84 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 127
                                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.762682IPR017930Myb domain
SuperFamilySSF466894.87E-3128125IPR009057Homeodomain-like
SMARTSM007171.8E-143080IPR001005SANT/Myb domain
PfamPF002493.1E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-233285IPR009057Homeodomain-like
CDDcd001671.06E-113378No hitNo description
SMARTSM007171.3E-1483131IPR001005SANT/Myb domain
PROSITE profilePS5129418.70783133IPR017930Myb domain
PfamPF002495.9E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2386132IPR009057Homeodomain-like
CDDcd001671.24E-7104127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDVKPGRVSD TTRNSSHHEE DEDAVMMDLR RGPWTVEEDL ALMNYIANHG EGRWNSLARC  60
AGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA QHLPGRTDNE  120
IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLVER IQAAASSATA TTGASSSITN  180
SAANAYHFNN NNGFQPVALQ QATVIGSNND LAGSYTTPDN SSTAASSDSF GTQVSPVSEL  240
TDYYSNMSVN NNDVPSSQAT LDYIQATNPH HQVGYHDSMT SPSGYSFNQG GLNSHSFQAA  300
SAPEQNNNGQ WGMDGGDFSD NLWNVEESDM WFLQQQLGNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242812524120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295042.10.0PREDICTED: transcription factor MYB108
SwissprotQ9FGY33e-92MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2P6QZB00.0A0A2P6QZB0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004295042.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.19e-90myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]