PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000008.1.g00035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 309aa MW: 33906.9 Da PI: 9.4921 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.4 | 9.8e-33 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh+hAl+R RgsgGrF FANhyb_rscf00000008.1.g00035.1 150 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHQHALNRVRGSGGRF 206 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.7E-36 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.247 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.9E-24 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.3E-28 | 152 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 154 | 174 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.9E-24 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MPLNTNCMSW NPNERQVSPP VSKDVSFKME LPPQLHHDAK HLGLQVQPDS GSGTTQSIGQ 60 SQGQCVSSES GEDDARGKGV EGTMKPAFLS NLDFMPHPSQ AGYSNVVPQF HPYADPYYGA 120 FLTPYGPQAM PPMVGMGPPR VPLPLDLQED GPIYVNAKQY HGILRRRQSR AKLEAQNKLL 180 KARKPYLHES RHQHALNRVR GSGGRFLSKK ELQQYDQNHS SSSNDHVLGS IDFHQKDTPQ 240 RENHHSGSSD LVTSVASHSG ITSVSGTNAM FRQPDRRFSG GMSSHMSGAM QFSGRLMGGG 300 NQHCASVVR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-21 | 150 | 211 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460478.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_011460482.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2 | ||||
TrEMBL | A0A2P6RKI2 | 0.0 | A0A2P6RKI2_ROSCH; Putative transcription factor Hap2/NF-YA family | ||||
STRING | XP_004287602.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72830.1 | 8e-37 | nuclear factor Y, subunit A3 |