PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000006.1.g00024.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 363aa MW: 39481 Da PI: 7.0235

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000006.1.g00024.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	245	283	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq FANhyb_rscf00000006.1.g00024.1 245 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 283 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.668	233	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.05E-6	243	287	No hit	No description
SuperFamily	SSF47459	5.37E-10	243	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-8	247	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNRGHVLQSS PVQQMMAAGN PNWWNINSMR APITTNQPSS SPFLPPPHHS SFLIPQFQPT 60 HPSSSSVPFI PSWHDTNNQN QELPESWSQL LMGGLVSEHD KANGLRQLIH QAKKLEDWEE 120 HILSSQAHPN APVNVDVKQE NSPPGSFVYG HHGTGNNNED FQSSALCSLS QIMPTSSTAA 180 SASSPKSSCV TSFGSNMLDF SNKSEARHPP PSRSSSECNS SATGGAVKKA RVQPSSSAQP 240 TFKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQNQIEVHG ERNCMFPEDP 300 GQLLNDNCMK MKGVNSEQDA YQEPKKDLRS RGLCLVPVSC TLQVGSDNGA DYWAPAALGG 360 GFQ

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNRGHVLQSS PVQQMMAAGN PNWWNINSMR APITTNQPSS SPFLPPPHHS SFLIPQFQPT  60
HPSSSSVPFI PSWHDTNNQN QELPESWSQL LMGGLVSEHD KANGLRQLIH QAKKLEDWEE  120
HILSSQAHPN APVNVDVKQE NSPPGSFVYG HHGTGNNNED FQSSALCSLS QIMPTSSTAA  180
SASSPKSSCV TSFGSNMLDF SNKSEARHPP PSRSSSECNS SATGGAVKKA RVQPSSSAQP  240
TFKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQNQIEVHG ERNCMFPEDP  300
GQLLNDNCMK MKGVNSEQDA YQEPKKDLRS RGLCLVPVSC TLQVGSDNGA DYWAPAALGG  360
GFQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011464892.1	0.0	PREDICTED: transcription factor bHLH68
Swissprot	Q8S3D1	1e-88	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2P6RJP9	0.0	A0A2P6RJP9_ROSCH; Putative transcription factor bHLH family
STRING	XP_004299993.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	7e-78	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]