PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000005.1.g00058.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARR-B
Protein Properties Length: 909aa    MW: 99926.3 Da    PI: 5.0418
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000005.1.g00058.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.61.4e-23222275155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     k++++W++ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  FANhyb_rscf00000005.1.g00058.1 222 KAKVVWSNALHNHFLLAIKHI-GLDKAVPKRILEFMNVPGLTRENVASHLQKYRM 275
                                     6799*****************.********************************7 PP
2Response_reg71.53.5e-24181241107
                                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEE CS
                    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivv 77 
                                     +l+vdD+ + ++++  +l+   y ev ++ ++ +al +l++ +  +Dl+++D+ mp+m+Glel k  + e  +lp+i++
  FANhyb_rscf00000005.1.g00058.1  18 ILLVDDDITTLNIVSAMLKTWSY-EVVTVPNPIDALSILRKGKcsFDLVVTDLHMPQMNGLELQKLVHDEF-ELPVIMM 94 
                                     89*********************.*******************************************9999.9****** PP

                                     ESTTTHHHHHHHHHTTESEEEESS--HHHH CS
                    Response_reg  78 tahgeeedalealkaGakdflsKpfdpeel 107
                                     +a ++e+ +l+ l+ G   +++Kp+++e++
  FANhyb_rscf00000005.1.g00058.1  95 SADDKESVILKSLEGGSVYYIVKPVSREDI 124
                                     **************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.4E-3214140No hitNo description
SuperFamilySSF521721.85E-3115143IPR011006CheY-like superfamily
SMARTSM004484.0E-2616128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.31317132IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-2118125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.56E-2519132No hitNo description
SuperFamilySSF466893.05E-17220279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-24220279IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-24222275IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MYTEGGVEGR QYSANINILL VDDDITTLNI VSAMLKTWSY EVVTVPNPID ALSILRKGKC  60
SFDLVVTDLH MPQMNGLELQ KLVHDEFELP VIMMSADDKE SVILKSLEGG SVYYIVKPVS  120
REDIQMVWKC VLQSRKSRSS SVTLEEIMNA GASGEFASGQ LLRGPGELED LDCISINNDV  180
EYKEDHKKGQ SGKKKMRKRD RNMDDEEDDD GEHDRRLLAR KKAKVVWSNA LHNHFLLAIK  240
HIGLDKAVPK RILEFMNVPG LTRENVASHL QKYRMFLKRV AEKARLSKCL SERIFRSSLA  300
FGLPSTASFN HVQREQYAEY LKQQLQMNEM GLAPPLQNTL ATLGTAHLGS SSFQYPMNYN  360
QQSAALNLAS NDPQCHQLFG SGQSRLLMNN TLQQQRSMQL GNGMNMFSQA NQGSGFGMQM  420
MNNNDGSIGG YGSLMNNGGN GLMNGGTNWM ETYSQQSQAK QLQKALNFTS NPFNFGNTPR  480
VSSPSIDNLM SPMNNANRGP SFGGITSQPA RGFDNIINGG YNGLAINNEV VNGITNGVRN  540
VNLNGTNCNA PTLGNIGSNV SSSRFETSTA NPIAPIFPRN IQQQQNASLL LSPNGLQPNQ  600
YGMSSTSGCG NNDFSFSSLT NNSTRNFNIS LANDDDDMMV INNLVLQQLE NCQPPSHQKQ  660
GGEEVPVNLT SMLYQDKVPA PNPTIDAQVQ MNTNHAAYGL VQQTPNHVAN SQVQLNPNPS  720
VNGEVYQLNV ANPLSNDRVQ LTPNPFVNGQ DQQNPNLNEI SQFELNPSPT PTVHSQVKLN  780
SAVNDEAQLD PIRFLNILNS NPVADRHLDL NPTANQVENP NLSCSSASNS QLGELNPTAN  840
QSGNPDFFGL GSYRKEDNAA DDEQSWSPGE QGGNQQMLNS EFTSMFQSDD YSSLLDQQFA  900
SQASQGLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-21219281264ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215224RLLARKKAKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309227.10.0PREDICTED: two-component response regulator ARR2-like
TrEMBLA0A2P6SMY40.0A0A2P6SMY4_ROSCH; Putative response regulator and transcription factor RR-A-type family
STRINGXP_004309227.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-54response regulator 2