PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00000004.1.g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | YABBY | ||||||||
Protein Properties | Length: 158aa MW: 17807.2 Da PI: 5.1996 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 124.9 | 1.1e-38 | 11 | 145 | 6 | 134 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaae..shldeslkeelleelkv 77 +eq+CyvqC+fC t+l+vsvP +sl+++vtvrCGhC+ llsvn+ kas +lla+ +++d++ e+ e+ FANhyb_rscf00000004.1.g00026.1 11 PAEQICYVQCGFCATLLLVSVPCSSLSRLVTVRCGHCSCLLSVNMIKASflpfhHLLASLgqDDVDQEKDREICVEEIE 89 579*****************************************99887566655555541133344444444333333 PP YABBY 78 eeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 + + +++++s s++ + +e+ ++ + + v++PPekrqr+Psaynrfi FANhyb_rscf00000004.1.g00026.1 90 KVKYPGLGDMRSQSMVVSNNY-ENEEDYTNTFSLNHIVNKPPEKRQRAPSAYNRFIN 145 333333333443333333333.226666777777777******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-36 | 11 | 145 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSTLNHLFDL PAEQICYVQC GFCATLLLVS VPCSSLSRLV TVRCGHCSCL LSVNMIKASF 60 LPFHHLLASL GQDDVDQEKD REICVEEIEK VKYPGLGDMR SQSMVVSNNY ENEEDYTNTF 120 SLNHIVNKPP EKRQRAPSAY NRFINSGDLE HELASVDH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298482.1 | 1e-103 | PREDICTED: axial regulator YABBY 4 isoform X2 | ||||
Swissprot | Q9LDT3 | 7e-39 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2P6R3H2 | 9e-71 | A0A2P6R3H2_ROSCH; Putative transcription factor C2C2-YABBY family | ||||
STRING | XP_004298482.1 | 1e-102 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-29 | YABBY family protein |
Publications ? help Back to Top | |||
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