PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_rscf00000003.1.g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 26450.6 Da PI: 4.882 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.7 | 7.9e-38 | 7 | 104 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ FANhyb_rscf00000003.1.g00026.1 7 SCGACKFLRRKCTSECVFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQHRSDAALTMSYEALARMRDPIYGCVS 85 6************************9789************************************************** PP DUF260 79 vilklqqqleqlkaelall 97 i++lqqq++ l++e+++l FANhyb_rscf00000003.1.g00026.1 86 QIFALQQQVAYLQEEIETL 104 ***************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.828 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-36 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQH 60 RSDAALTMSY EALARMRDPI YGCVSQIFAL QQQVAYLQEE IETLLQNQMV SLVSANSSAC 120 GSSEGNSNSN TFSGLQVFPA QQYDIAVDRQ KFQNQPEPPI LLPQVGVAST NQGFSSHDHQ 180 MDIQMPTLYE WEEVKTFGDR STQDSLEKFL EDIDQENLGH NPWLNDPSIA WNWKRE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 3 | 103 | 7 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308845.1 | 1e-179 | PREDICTED: LOB domain-containing protein 29 | ||||
TrEMBL | M5X8P1 | 1e-100 | M5X8P1_PRUPE; Uncharacterized protein | ||||
STRING | XP_004308845.1 | 1e-178 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-54 | LOB domain-containing protein 33 |