PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000003.1.g00010.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 1136aa    MW: 127189 Da    PI: 6.3685
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000003.1.g00010.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.64.1e-11364810121367
                            GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77  
                                      l++lL+ cA+a+++gd +  ++lL+r++++asp+gd mqR+a yf+ +L+ar+a+s++++y+al +++ts    +++
  FANhyb_rscf00000003.1.g00010.1  648 LRTLLTVCAQAIAAGDERTGNELLKRIRQHASPEGDGMQRMACYFADGLEARMAGSGTQIYRALIAKPTS---AADV 721 
                                      5789***************************************************************999...9*** PP

                            GRAS   78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg. 153 
                                      l+a++lf  ++P+ k+s++  N++I++  e+++ +HiiDf+i++G+QWp+L+q L+sR +gpp+lRiTg++ p++g 
  FANhyb_rscf00000003.1.g00010.1  722 LKAYHLFLAACPFRKLSNFFSNKTIMNVSEKATSLHIIDFGIMYGFQWPCLIQRLSSRLGGPPKLRITGIDFPNPGf 798 
                                      ***************************************************************************9* PP

                            GRAS  154 .skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229 
                                        +e++eetg+rLa++A++++vpfefn+ +a++++++++e+L+++++++l+Vn+ ++l +llde+v ++s+rd vL+
  FANhyb_rscf00000003.1.g00010.1  799 rPAERVEETGRRLANYAKTFKVPFEFNA-IAQKWDTIQIEDLKLDRDDVLVVNSCYRLRNLLDETVVVDSPRDIVLN 874 
                                      ****************************.7*********************************************** PP

                            GRAS  230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306 
                                      l+++++P+v ++   +  ++++ Fl rf eal ++s++fd+l++ +p +  er+ +Ere++gre++nv+aceg+er+
  FANhyb_rscf00000003.1.g00010.1  875 LIRKMNPDVYILGVVNGAYSAPFFLSRFREALFHFSTIFDMLDMCVPCDIPERMLIEREIFGREAMNVIACEGSERI 951 
                                      ***************************************************************************** PP

                            GRAS  307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 
                                      er et+++W+ r ++aGF+++pl++++++ ak  l++++ + + ++e+s +l++gWk+r +
  FANhyb_rscf00000003.1.g00010.1  952 ERPETYKQWQVRNRRAGFTQLPLNQEIMDIAKDRLHTYYHKDFVIDEDSRWLLQGWKGRIV 1012
                                      ***************************************888****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.482622999IPR005202Transcription factor GRAS
PfamPF035141.4E-1106481012IPR005202Transcription factor GRAS
SuperFamilySSF520475.89E-510531125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 1136 aa     Download sequence    Send to blast
MVMDQSLSGF YGSSNELLKF RDQALSDSMN KKLDSGFRNG SGSNKVLGHK YATTVQVPPT  60
QIPTSSALPL SMIPDGDSNE DCDFSDVVLK YISQMLMEED MEEKTCMYQE SAALHSAEQS  120
FYELIGEKHH LPPDLTPTAD QNHGSPDESH SLHSSCCSTT STSTSSSIRD CDLLEFKYLN  180
VASQSTMLIK LKSESRIFAN FQKSTEARFR PSPLLLDQSG QCWLKEKHQP LHKTPKSSSS  240
SPFKSSSLSC VHNGVLKTWT TERVSILFSR VYPVVISMVM DQSLSGFYGS SNELLKFRDQ  300
ALSDSMNKKL DSGFRNGSGS NKVLGHKYAT TVQVPPTQIP TNSALPLSMI PDGDSNEDCD  360
FSDVVLKYIS QMLMEEDMEE KTCMYQESAA LHAAEQSFYE LIGEKHHLPP DLTPTADQNH  420
GSPDESHSLH SSCCSTTSTS TSSSIRDCDL LEFKYLNVAS QSTSQSSHAS SNGTGNFVDG  480
FVESPVSTLR VPDFFNETDS ILQFKKGFEE ASKFLPNGNN LIVDLESNTP LLKELNAEAT  540
DMTVKVDKKN NHEYPSAGSR GKKHPYHDDE ILEGERSNKQ SSVSTESAVS PEMFDMVLLN  600
CGQSESALRE ALQNGTKKNI PQSGHSKGPS GGKSRGKKQG GKKDVVDLRT LLTVCAQAIA  660
AGDERTGNEL LKRIRQHASP EGDGMQRMAC YFADGLEARM AGSGTQIYRA LIAKPTSAAD  720
VLKAYHLFLA ACPFRKLSNF FSNKTIMNVS EKATSLHIID FGIMYGFQWP CLIQRLSSRL  780
GGPPKLRITG IDFPNPGFRP AERVEETGRR LANYAKTFKV PFEFNAIAQK WDTIQIEDLK  840
LDRDDVLVVN SCYRLRNLLD ETVVVDSPRD IVLNLIRKMN PDVYILGVVN GAYSAPFFLS  900
RFREALFHFS TIFDMLDMCV PCDIPERMLI EREIFGREAM NVIACEGSER IERPETYKQW  960
QVRNRRAGFT QLPLNQEIMD IAKDRLHTYY HKDFVIDEDS RWLLQGWKGR IVLDEFRLRG  1020
RNNLEHLKDL NQLQGSLTIQ IYGHPKMADN AAILVNKPHL LQMELNFISA DELSQREIMD  1080
GLQPHACLES LFISWYKGGT FSHWLSSLHS LRVLILRFCR NIKTLPLLGK EETSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-46655100826368Protein SCARECROW
5b3h_A2e-46655100825367Protein SCARECROW
5b3h_D2e-46655100825367Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307492.10.0PREDICTED: scarecrow-like protein 14
TrEMBLA0A2P6SKM30.0A0A2P6SKM3_ROSCH; Putative transcription factor GRAS family
STRINGXP_004307492.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein