PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00000002.1.g00020.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 211aa MW: 23174.7 Da PI: 4.3225

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00000002.1.g00020.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	12	55	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT e d+ + +a + ++ + +W++Ia+ + g++ +++k+++ FANhyb_rscf00000002.1.g00020.1 12 WTWEQDKAFENALATYPEDspdRWEKIAADVE-GKSVEEIKHHYE 55 ******************************.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.7E-9	8	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	10	58	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.21E-12	10	65	IPR009057	Homeodomain-like
CDD	cd00167	3.37E-9	12	58	No hit	No description
Pfam	PF00249	1.7E-8	12	55	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.446	12	58	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSVEEAAASS LWTWEQDKAF ENALATYPED SPDRWEKIAA DVEGKSVEEI KHHYELLVDD 60 ISQIEAGCIP LPCYNSSFEG STSLANDEGT SKKGHYASES NHGSKASRAD QERRKGIAWT 120 EDEHSVVPLL RDYEFACPVI TKVAFADSAG REGKMNFLFM NVPFSILDIF IPQDLLSSDG 180 LPVSLASAIA PRHYCIDIKE NGDSSVGIGI N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-20	12	77	11	76	RADIALIS
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297715.1	1e-81	PREDICTED: transcription factor DIVARICATA
Refseq	XP_011463429.1	1e-81	PREDICTED: transcription factor DIVARICATA
Refseq	XP_011463430.1	1e-81	PREDICTED: transcription factor DIVARICATA
Swissprot	Q9FNN6	4e-43	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A2P6R4S9	5e-76	A0A2P6R4S9_ROSCH; Putative transcription factor MYB-HB-like family
TrEMBL	F2QKX9	5e-76	F2QKX9_ROSHC; Putative MYB transcription factor
STRING	XP_004297715.1	4e-81	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16956	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-45	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]