PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon19443061_s.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRAS | ||||||||
Protein Properties | Length: 77aa MW: 8716.12 Da PI: 4.449 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 37.2 | 4.2e-12 | 4 | 74 | 142 | 214 |
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll 214 l iT+vg k++++etgerLa++A++l++pfe++ +++++++d++ + ++ + +Ea++V l l ++ FANhyb_icon19443061_s.1.g00001.1 4 LTITAVGV---RGKQNIKETGERLASVAKSLNLPFEYKEVIVSDMQDIKDHLFDEIEdEEAVVVYAPLVLRTMI 74 67999999...589**********************************999996554499****9999888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.048 | 1 | 77 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-9 | 4 | 74 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
VELLTITAVG VRGKQNIKET GERLASVAKS LNLPFEYKEV IVSDMQDIKD HLFDEIEDEE 60 AVVVYAPLVL RTMIMRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024172362.1 | 2e-37 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2P6PI40 | 6e-36 | A0A2P6PI40_ROSCH; Putative transcription factor GRAS family | ||||
STRING | XP_004301794.1 | 9e-34 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 3e-07 | GRAS family protein |