PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon18533625_o.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SBP | ||||||||
Protein Properties | Length: 78aa MW: 8457.72 Da PI: 9.8757 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 72.7 | 6.6e-23 | 25 | 72 | 2 | 49 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 Cq+++C+adl +ak+y+rrhkvC++hskapvv++ gl+qrfCqqCsr FANhyb_icon18533625_o.1.g00001.1 25 CQAQSCNADLRDAKQYYRRHKVCDFHSKAPVVVIGGLRQRFCQQCSRC 72 **********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.3E-24 | 18 | 72 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.802 | 22 | 78 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-22 | 23 | 73 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-17 | 25 | 72 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MVMNSASATS PSKKGSAAGG SMTSCQAQSC NADLRDAKQY YRRHKVCDFH SKAPVVVIGG 60 LRQRFCQQCS RCSLQTLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 2e-17 | 20 | 71 | 1 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293885.1 | 1e-42 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38741 | 1e-20 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
Swissprot | Q8GXL3 | 4e-20 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A2P6Q483 | 3e-34 | A0A2P6Q483_ROSCH; Squamosa promoter-binding-like protein | ||||
STRING | XP_004293885.1 | 6e-42 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 2e-22 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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