PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00047777_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 85aa MW: 9868.4 Da PI: 6.9292 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 75.3 | 8.5e-24 | 1 | 60 | 38 | 96 |
NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi.fdflvdiv 96 mis+e+P+l+skacelfi+eltlr+wl++e +k+rtl+k+dia+a+ + + + fl iv FANhyb_icon00047777_a.1.g00001.1 1 MISSETPILFSKACELFIMELTLRAWLQTEASKKRTLQKCDIAKAIRKDQLlHHFLAPIV 60 8*********************************************98765167776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.71E-15 | 1 | 53 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.8E-18 | 1 | 47 | IPR009072 | Histone-fold |
Pfam | PF00125 | 5.7E-10 | 1 | 49 | IPR007125 | Histone H2A/H2B/H3 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MISSETPILF SKACELFIME LTLRAWLQTE ASKKRTLQKC DIAKAIRKDQ LLHHFLAPIV 60 LCTLHYDHDD DDDSENATPR KKRVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-17 | 1 | 60 | 35 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024191896.1 | 2e-38 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q655V5 | 2e-17 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A2P6QUM4 | 3e-37 | A0A2P6QUM4_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_010108900.1 | 2e-24 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14399 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 6e-20 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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