PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00025939_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRAS | ||||||||
Protein Properties | Length: 168aa MW: 18384 Da PI: 7.1329 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 67.4 | 2.9e-21 | 94 | 168 | 50 | 127 |
GRAS 50 aarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWp 126 a+rla+++++ly +l+++++s ++ ++++++ v+P+lk+s + aNq+Il+a e++e++HiiDf+i qG+QWp FANhyb_icon00025939_a.1.g00001.1 94 ATRLAGTGTQLYTTLATKRAS---AADFSKFYRALLAVCPFLKMSMIFANQMILKAYEKAETLHIIDFGIRQGFQWP 167 6899*********99999998...89999***********************************************9 PP GRAS 127 a 127 a FANhyb_icon00025939_a.1.g00001.1 168 A 168 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.051 | 1 | 168 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-18 | 94 | 168 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
LEDGRNNKQS VVYVDDEEGE LSDSFGKALL SGKAVESKED QVCQNGANNG LQQDVLVSQK 60 ACGMKPGNKK EVIDLRRLLI SCAEAVAVDD RGTATRLAGT GTQLYTTLAT KRASAADFSK 120 FYRALLAVCP FLKMSMIFAN QMILKAYEKA ETLHIIDFGI RQGFQWPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294644.1 | 1e-98 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-35 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P6QIX5 | 1e-69 | A0A2P6QIX5_ROSCH; Putative transcription factor GRAS family | ||||
TrEMBL | A0A2P6QIZ9 | 1e-69 | A0A2P6QIZ9_ROSCH; Putative transcription factor GRAS family | ||||
STRING | XP_004294644.1 | 5e-98 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 8e-30 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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