PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_icon00019801_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 128aa MW: 14912.2 Da PI: 10.3931 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.2 | 1.8e-25 | 16 | 101 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 +fYn+YA e+GFsvr+s+++ksk+ ei++++f+C+keg++++++ + +r++ rtgC ak+ v k+ +g + FANhyb_icon00019801_a.1.g00001.1 16 EFYNKYAFEAGFSVRRSTTSKSKDGSEIIRQEFCCYKEGHSKKKTIQ---PKRRKGIVRTGCLAKIDVVKR-SGIYA 88 6***************************************9997655...8889999*************9.9**** PP FAR1 78 vtkleleHnHela 90 vt++ + HnH+l+ FANhyb_icon00019801_a.1.g00001.1 89 VTQFMEAHNHPLT 101 ***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-22 | 16 | 101 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MPTKNLEFRT LEELYEFYNK YAFEAGFSVR RSTTSKSKDG SEIIRQEFCC YKEGHSKKKT 60 IQPKRRKGIV RTGCLAKIDV VKRSGIYAVT QFMEAHNHPL TSRERVHLLP SHRQVSNATK 120 CLTMELRL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024156220.1 | 6e-67 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024195605.1 | 7e-68 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067DIQ9 | 8e-31 | A0A067DIQ9_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_004291805.1 | 5e-80 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-19 | FAR1-related sequence 5 |