PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_icon00019749_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 54aa MW: 5944.72 Da PI: 4.7425 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 58.9 | 1.5e-18 | 1 | 53 | 45 | 97 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + ++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+++la++ FANhyb_icon00019749_a.1.g00001.1 1 MFQDLPESQRADAVSSMVYEANARLRDPVYGCAGAICNLQKQVTELQSQLAKA 53 67899*********************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.752 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-17 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 54 aa Download sequence Send to blast |
MFQDLPESQR ADAVSSMVYE ANARLRDPVY GCAGAICNLQ KQVTELQSQL AKAQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-15 | 1 | 54 | 55 | 108 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-15 | 1 | 54 | 55 | 108 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307415.1 | 1e-29 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-23 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | D7TME5 | 3e-26 | D7TME5_VITVI; Uncharacterized protein | ||||
STRING | XP_004307415.1 | 4e-29 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25860 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-26 | LOB domain-containing protein 1 |