PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00016064_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | AP2 | ||||||||
Protein Properties | Length: 91aa MW: 10258.4 Da PI: 12.0183 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.8 | 2.4e-07 | 56 | 86 | 1 | 29 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krk 29 s y+GV++++++gr++A+++d ++n ++k FANhyb_icon00016064_a.1.g00001.1 56 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNK 86 57*******************9888766553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-4 | 56 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.755 | 57 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MAKLSHQNQK ANGNNNATTT AAAAVNNANA VNKTAVTKVK RTRRSVPRDS PPQRSSIYRG 60 VTRHRWTGRY EAHLWDKNCW NESQNKKGRQ G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021822580.1 | 1e-40 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 5e-27 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A3S8T937 | 7e-51 | A0A3S8T937_FRAAN; Transcription factor AP28 | ||||
STRING | EMJ27817 | 9e-40 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 9e-26 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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