PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00013591_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 246aa    MW: 28065.9 Da    PI: 9.4985
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00013591_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.11.6e-092415290
                              FAR1 52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                                      r++r++tr++C a+++++ ++ +g+++v+k++ eHnHela
  FANhyb_icon00013591_a.1.g00001.1  2 RTPRKQTRVNCVARFRINYNDtSGVYVVKKFDPEHNHELA 41
                                      6789*****************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-6241IPR004330FAR1 DNA binding domain
PfamPF105512.5E-32141231IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
RRTPRKQTRV NCVARFRINY NDTSGVYVVK KFDPEHNHEL ATGNQIAFVR AHRHVGTESL  60
ALTNTMTRVS IRPCHTYEYM VEQAGGYSAV GFTIKDLYNK LDQQRRTSPF ESDSEGALSF  120
MRGLAAKDPH FICRFTTDPE DSTYKTNAYN QPLVLFVGTN NHRGSIVFGA ALISDETVET  180
YTWLLRIFLE SMNGKMPKAV LTDSDEAMRQ AIETVMPEAR HRLCIWHIAK NATSHLKTEK  240
KLKAFN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462177.11e-132PREDICTED: uncharacterized protein LOC105350884
TrEMBLA0A2P6RCK22e-75A0A2P6RCK2_ROSCH; Putative transcription factor FAR family
STRINGXP_004308570.11e-131(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1389628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-42FAR1-related sequence 5