PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_icon00012135_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 86aa MW: 9498.16 Da PI: 9.4658 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.8 | 2.5e-26 | 4 | 86 | 1 | 78 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+y FANhyb_icon00012135_a.1.g00001.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIY 82 6****************************************************************************** PP DUF260 75 Gavg 78 G+vg FANhyb_icon00012135_a.1.g00001.1 83 GSVG 86 *997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.332 | 3 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-22 | 4 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 86 aa Download sequence Send to blast |
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEN 60 LRPAIFRSLL YEACGRIVNP IYGSVG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010693111.1 | 6e-58 | PREDICTED: LOB domain-containing protein 41 | ||||
Refseq | XP_026380916.1 | 6e-58 | LOB domain-containing protein 41-like | ||||
Refseq | XP_026386660.1 | 7e-58 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 5e-55 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2U1PPB1 | 2e-56 | A0A2U1PPB1_ARTAN; Lateral organ boundaries domain-containing protein | ||||
STRING | XP_010693111.1 | 2e-57 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-57 | LOB domain-containing protein 41 |