PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00011202_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRAS | ||||||||
Protein Properties | Length: 249aa MW: 29072 Da PI: 8.7992 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 258.2 | 3e-79 | 2 | 248 | 92 | 337 |
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 k+ + aN++I +a+e++e++HiiDf+i qG+QWpaL++ L+ Rp+gpp+lRiTg++ sg +e+++etg+rLa FANhyb_icon00011202_a.1.g00001.1 2 KMMMIFANHMIIKAAEKAETLHIIDFGIRQGFQWPALIHCLSRRPGGPPKLRITGLELTLSGchPEETVQETGHRLA 78 778899****************************************************8887999************ PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 +++++++vpfe+ + +ak++e+l+l+e++v+++E+laVn+ + ++llde+v ++s+rd+vL+++++l+P+++v + FANhyb_icon00011202_a.1.g00001.1 79 NYCKRFNVPFEYYA-IAKKWETLQLDEFKVQRNEVLAVNCLCRFKYLLDETVMVNSPRDTVLNIIRKLNPDIFVQSV 154 **************.7************************************************************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 + +h+++ F+ rf eal ++salfd l+++lpre++ r E+e++gre++n+vaceg +r+ r et+++W+ r + FANhyb_icon00011202_a.1.g00001.1 155 VNGSHDAPFFVPRFREALFHFSALFDLLDTTLPREDQVRLGFEKEFIGREVMNIVACEGINRIVRPETYKQWQIRNM 231 ***************************************************************************** PP GRAS 321 eaGFkpvplsekaakqa 337 +aGF+ +pl++++++++ FANhyb_icon00011202_a.1.g00001.1 232 RAGFRLLPLDYEVVNKI 248 **********9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 50.319 | 1 | 249 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-76 | 2 | 248 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MKMMMIFANH MIIKAAEKAE TLHIIDFGIR QGFQWPALIH CLSRRPGGPP KLRITGLELT 60 LSGCHPEETV QETGHRLANY CKRFNVPFEY YAIAKKWETL QLDEFKVQRN EVLAVNCLCR 120 FKYLLDETVM VNSPRDTVLN IIRKLNPDIF VQSVVNGSHD APFFVPRFRE ALFHFSALFD 180 LLDTTLPRED QVRLGFEKEF IGREVMNIVA CEGINRIVRP ETYKQWQIRN MRAGFRLLPL 240 DYEVVNKIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-37 | 1 | 240 | 109 | 334 | Protein SCARECROW |
5b3h_A | 9e-37 | 1 | 240 | 108 | 333 | Protein SCARECROW |
5b3h_D | 9e-37 | 1 | 240 | 108 | 333 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294644.1 | 1e-177 | PREDICTED: scarecrow-like protein 14 | ||||
Refseq | XP_011461309.1 | 1e-180 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-110 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P6QIZ7 | 1e-157 | A0A2P6QIZ7_ROSCH; Putative transcription factor GRAS family | ||||
STRING | XP_004294644.1 | 1e-177 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-113 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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