PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00008516_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13716.1 Da PI: 4.0524 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.1 | 5.7e-12 | 2 | 75 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +p +f+ + +g+ ++ + +le+ s sW+v + ++ +++++l++GW+eFv n Lk g+ v++++ g+ +f +v + FANhyb_icon00008516_a.1.g00001.1 2 IPQEFCWNSDGVVPQ--QCRLETMS-GSWNVDV--KRIGREIFLEEGWEEFVVGNSLKLGEYVTLHYYGHAKF--FVEI 73 899***999888655..58888855.59*****..*******************************9987666..8888 PP E- CS B3 97 fr 98 + FANhyb_icon00008516_a.1.g00001.1 74 YG 75 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.069 | 1 | 77 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-9 | 2 | 74 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-11 | 2 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-14 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
QIPQEFCWNS DGVVPQQCRL ETMSGSWNVD VKRIGREIFL EEGWEEFVVG NSLKLGEYVT 60 LHYYGHAKFF VEIYGHNHCE RSKASKTDRF LEDEDEDEDD VIIIDSDSDS DDVLMWF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308415.2 | 4e-62 | PREDICTED: B3 domain-containing protein At1g16640-like | ||||
TrEMBL | A0A2P6R2S6 | 7e-39 | A0A2P6R2S6_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004308415.1 | 1e-61 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25641 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 3e-12 | B3 family protein |