PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00008380_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 223aa    MW: 25142.5 Da    PI: 9.8879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00008380_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-1329794498
                                      -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                       +W v +  +   gr +l+kGWk+Fv++n L+ g+f+vF++ g+s+f  +v ++ 
  FANhyb_icon00008380_a.1.g00001.1 29 GTWLVDV--KSDNGRLFLQKGWKQFVRDNVLRLGEFLVFRYAGNSKF--FVDIYG 79
                                      58*****..889999****************************9999..888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.957181IPR003340B3 DNA binding domain
SMARTSM010190.0014281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16583IPR015300DNA-binding pseudobarrel domain
CDDcd100174.91E-14578No hitNo description
SuperFamilySSF1019362.16E-16583IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-11678IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
LLLQIIPQAF HKHFDGRVPQ QSHLWTPAGT WLVDVKSDNG RLFLQKGWKQ FVRDNVLRLG  60
EFLVFRYAGN SKFFVDIYGR HGCKKEFVMA ATGSERPLVK RQSEEIHRTD ADSKKYVGSS  120
TRHPKQNMDN QNLEGSTGGY KAGQATVTVK SEPISDSELK TYVDVDESIR NMNTRETLAS  180
HPQVENRTQA TALEAANKCA SKHPCFRVIL TQSYVTKGML VGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308266.11e-154PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2P6RRW55e-95A0A2P6RRW5_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308266.11e-153(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.18e-16B3 family protein