PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00008008_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 51aa MW: 5854.92 Da PI: 9.3719 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 70.3 | 3.9e-22 | 5 | 51 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lr++C++dC++apyfp+++p++f+nvh+++Ga+nv +lk FANhyb_icon00008008_a.1.g00001.1 5 RCAACKYLRKACPEDCIFAPYFPSNNPQRFENVHRIYGAKNVATMLK 51 6******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.248 | 4 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-20 | 5 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
MVMGRCAACK YLRKACPEDC IFAPYFPSNN PQRFENVHRI YGAKNVATML K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-15 | 6 | 50 | 12 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-15 | 6 | 50 | 12 | 56 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309226.1 | 2e-32 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 2e-20 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 2e-20 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2P6SMZ9 | 2e-24 | A0A2P6SMZ9_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004309226.1 | 9e-32 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 8e-23 | LOB domain-containing protein 23 |