PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00006770_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 230aa    MW: 26547.7 Da    PI: 9.0841
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00006770_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08133153526
                                       --SGGGGTS--TTTTT-SS-SS CS
                           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                        C +++r G C++Gd+C FaHg
  FANhyb_icon00006770_a.1.g00001.1 133 VCADYRR-GGCSRGDSCEFAHG 153
                                       799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.04E-5127157IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-6132155IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6133153IPR000571Zinc finger, CCCH-type
SMARTSM003563.8163186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSSVCAEQHK FHTSHHLLSS KKSHHLLREV DIPPRKLLTR RSAPHRDLSS SPDMYDSPRF  60
SASDEALLRK FLPYNTDDDD DDPYSSDHFR MFEFKVRRCT RSRSHDWTDC PFAHPGEKAR  120
RRDHRRYHYS GTVCADYRRG GCSRGDSCEF AHGVFECWLH PARYRTEACK DGKHCKRKVC  180
FFAHTPRQLR ILPVNHSRSS SPDEVVISPG SGCCKKSSKY LNNSSSASCL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301223.11e-147PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA12e-73C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2P6RU251e-139A0A2P6RU25_ROSCH; Putative transcription factor C3H family
STRINGXP_004301223.11e-146(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-71C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]