PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00006655_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 283aa MW: 30673 Da PI: 5.0616

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00006655_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	119	139	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G +C+F Hg FANhyb_icon00006655_a.1.g00001.1 119 PCLYYAR-GYCKNGTSCRFLHG 139 8****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.328	114	141	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0016	116	140	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	117	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-5	118	139	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	119	139	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
SRLSLTIPNP SSSASTWAAL SSELRNQDET NHVLEEFQLQ DQLSFLNDGA LNLGGPKSPD 60 LFYPQSDLSS SPTNGSDQAL FSSYGGSGNW GGGGPLHRRS CSVSDVCLED PNSGFGWKPC 120 LYYARGYCKN GTSCRFLHGG GLGDLGSDGA QLVGSPSKLD MMDQSCHEVL LRSKTAQQQR 180 LAAASQLMAS ANSFPYSSKC MNFLLQQQQT DAQRAAAALM MGDDIHKFSR SPRLERNEFP 240 MMNGGAGMVN PASRQIYLTF PADSTFREED VSNYFSIYGP VQD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303082.1	1e-174	PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X2
Refseq	XP_011466839.1	1e-174	PREDICTED: zinc finger CCCH domain-containing protein 53 isoform X1
Swissprot	Q10M00	2e-63	C3H22_ORYSJ; Zinc finger CCCH domain-containing protein 22
TrEMBL	A0A2P6S8C1	1e-172	A0A2P6S8C1_ROSCH; Putative transcription factor C3H family
STRING	XP_004303082.1	1e-173	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF669	6	7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]