PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00006584_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 327aa MW: 37905.4 Da PI: 9.3302

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00006584_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.2	1.9e-11	10	77	25	90
FAR1 25 ngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 g+it+ ++vCs +g+r+ e+ + +++ rr+++etr +C + +kv+ + + ++v + ++H+H+la FANhyb_icon00006584_a.1.g00001.1 10 PGKITSLRLVCSAQGQRDVERMTnKKRVRRQKKETRFNCPCLFKVRYFNnIDAYVVVGFITHHTHPLA 77 5789***********988877466778899***********99899************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-9	11	77	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-30	199	293	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
NYKRLSTITP GKITSLRLVC SAQGQRDVER MTNKKRVRRQ KKETRFNCPC LFKVRYFNNI 60 DAYVVVGFIT HHTHPLAQAH ERCLLTPHRS VQDSHVALAT SMQRVSVKPC HTYEYIVNRS 120 GGFQQVGFTI KDLYNKLDSK RREILLESDA EAALAYMRGK VATDSHFYCK FSIDEDNRLA 180 NMFWRDSNCL HDYTSFGDVL VFDSTYKTNP YGKPLVLFVG SNNHLSTTVF GFGLLIDETI 240 ESYIWLLETF ILSMNNQKPI AILTDGDQAM RRAIEAVLPG CPHRLCTWHV SKNARNHLRN 300 NQALSEFRRC MWEEVTPYGF ERRWTAM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011470682.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6RCK2	1e-147	A0A2P6RCK2_ROSCH; Putative transcription factor FAR family
STRING	XP_004309150.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-53	FAR1-related sequence 5