PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_icon00005950_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 61aa MW: 6732.83 Da PI: 9.5349 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 74.6 | 1.9e-23 | 15 | 61 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+ FANhyb_icon00005950_a.1.g00001.1 15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 61 7********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.239 | 14 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-22 | 15 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 61 aa Download sequence Send to blast |
MKENGCSRKQ GAASPCAACK LLRRRCAQDC VFAPYFPADE PQKFANVHKV FGASNVNKML 60 Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 11 | 60 | 7 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 11 | 60 | 7 | 56 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004293726.1 | 6e-39 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 5e-34 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2P6Q6X9 | 2e-37 | A0A2P6Q6X9_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004293726.1 | 2e-38 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-36 | LOB domain-containing protein 4 |