PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00005950_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 61aa    MW: 6732.83 Da    PI: 9.5349
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00005950_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.61.9e-231561147
                            DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47
                                      +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l+
  FANhyb_icon00005950_a.1.g00001.1 15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 61
                                      7********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.2391461IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-221561IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MKENGCSRKQ GAASPCAACK LLRRRCAQDC VFAPYFPADE PQKFANVHKV FGASNVNKML  60
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-231160756LOB family transfactor Ramosa2.1
5ly0_B1e-231160756LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293726.16e-39PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE95e-34LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2P6Q6X92e-37A0A2P6Q6X9_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004293726.12e-38(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-36LOB domain-containing protein 4