PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00005132_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 140aa MW: 15852.5 Da PI: 6.2705 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.3 | 3.9e-21 | 45 | 134 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgk 75 kfY +Y+ vGF r++ + +s +g+i +r++vCskeg+r+++ + + r++r++tr++C a+++++ ++ +g+ FANhyb_icon00005132_a.1.g00001.1 45 KFYFAYSAAVGFGCRRDDKGES--KGRIRWRQWVCSKEGTRDRKYLEaDGLGRTPRKQTRVNCAARFRINYNDtSGV 119 6****************99998..899**************9998775678999*******************9*** PP FAR1 76 wevtkleleHnHela 90 ++v+k++ eHnHela FANhyb_icon00005132_a.1.g00001.1 120 YVVKKFDPEHNHELA 134 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-18 | 45 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MDASENENQA HEGVEDVAVD VPGFGSLKIA DVRDLTFETV EEAEKFYFAY SAAVGFGCRR 60 DDKGESKGRI RWRQWVCSKE GTRDRKYLEA DGLGRTPRKQ TRVNCAARFR INYNDTSGVY 120 VVKKFDPEHN HELATGNQVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298058.1 | 3e-80 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004298058.1 | 1e-79 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 9e-13 | FAR1 family protein |