PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00004289_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 196aa    MW: 21663.3 Da    PI: 5.0508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00004289_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-191767155
                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                      s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  FANhyb_icon00004289_a.1.g00001.1 17 SVYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 67
                                      78*****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-121767IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-231776IPR016177DNA-binding domain
CDDcd000182.65E-241777No hitNo description
SMARTSM003801.1E-371881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-321876IPR001471AP2/ERF domain
PROSITE profilePS5103223.8941875IPR001471AP2/ERF domain
PRINTSPR003674.1E-101930IPR001471AP2/ERF domain
PRINTSPR003674.1E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGEPNSGSSI VCGAATSVYR GVRKRKWGKW VSEIREPGKK TRIWLGSFET PEMAAAAYDV  60
AALHFRGREA RLNFPELVSY LPRPASSSPD DIRMAAHEAA RRLMSNNGDT NNSLVAAGHC  120
EVGSSSSNAV APVTVRLSPI QIQAINESPL DSPKMWMQMS EALMFEESMM FSNDFDDEGM  180
NSNQWGNMQQ DSLWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-171975360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464784.11e-140PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I23e-63ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3Q8TD591e-140A0A3Q8TD59_FRAAN; Transcription factor ERF13
STRINGXP_004299858.11e-118(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-65ERF family protein