PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00003813_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 396aa    MW: 44001.3 Da    PI: 8.8266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00003813_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-074062427
                                      ---SGGGGTS--TTTTT-SS-SSS CS
                           zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                                      ++C ff+r G+C+  d+C+F+Hgp
  FANhyb_icon00003813_a.1.g00001.1 40 VPCIFFQR-GFCSKADKCPFSHGP 62
                                      69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.4E-63662IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4783663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53761IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-44062IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-44162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
PLDGLLESPA ASSAGPSLPI PHTATMPATN ATFNSSKQAV PCIFFQRGFC SKADKCPFSH  60
GPNSITSSKV PQAPAATHGT EPSSHKKVFG GIQKCNQEMK IPQVSASKIV GVPPQSKPAP  120
KVVTAPPRNG VGIERNVIPT RDFDDEALRY KARSGFPAMN GDSTGQANHY LQAHVSENHG  180
FQNGKDVDEH LRESSPGFDV LVDDELGDSD YYHGEEQFGR TRVHDGRNLN SMNEYDLDRP  240
ADYNPIADGD RERFRDPRGY DPYDQMQGRY AWDQHRASSE RLLVGPAHSE RRGYRKSDSP  300
DHIDGSDLRH RLSKHRRGNG LRSVISNEYD GHVEERKSRP RRDPQQLPSH EGSLSSRLRG  360
RIKLPGGSSP VNGSDLRQER EGRGRHRDRS RDRSHD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335342RKSRPRRD
2382392RGRHRDRSRDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299447.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A2P6P1D80.0A0A2P6P1D8_ROSCH; Putative transcription factor C3H family
STRINGXP_004299447.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137