PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00002940_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 160aa MW: 18093.2 Da PI: 6.6834 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85 | 7.6e-27 | 107 | 156 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH +F++a+e LGG+e+AtPk +l+lm+v gL+++hvkSHLQ FANhyb_icon00002940_a.1.g00001.1 107 PRLRWTPQLHLSFLHALELLGGQERATPKLVLQLMNVRGLSISHVKSHLQ 156 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 103 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.3 | 103 | 160 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.88E-13 | 105 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-20 | 107 | 158 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-7 | 108 | 157 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MRNELELIGD LGDQKRKTDK ISEEQAENIW VESSQKCSSF DLNEDVSDNS DNDNGNTNVN 60 NLADHEPSSV RNDERRALAQ ENMNNAANII SNSSRAKVRP YVRSKLPRLR WTPQLHLSFL 120 HALELLGGQE RATPKLVLQL MNVRGLSISH VKSHLQVVIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-17 | 108 | 156 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 108 | 156 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 108 | 156 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 108 | 156 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-17 | 108 | 156 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460614.1 | 1e-93 | PREDICTED: two-component response regulator ARR12-like isoform X2 | ||||
TrEMBL | A0A2P6Q4Q8 | 2e-71 | A0A2P6Q4Q8_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004293956.1 | 9e-93 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-23 | G2-like family protein |