PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002744_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CO-like
Protein Properties Length: 335aa    MW: 36791.2 Da    PI: 5.6428
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002744_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.23.5e-083576239
                          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39
                                      + ++C+ +e+ ++   C+ +   lC +C   +H+     H++
  FANhyb_icon00002744_a.1.g00001.1 35 RVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplaHRH 76
                                      5789*****************************668888654 PP
2CCT70.54.2e-24262306145
                               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                                       Rea+++RY+eKrk+R F+K+irY+sRKa+Ae+RpR+KGrF+k++e
  FANhyb_icon00002744_a.1.g00001.1 262 REARVMRYREKRKNRTFQKTIRYASRKAYAETRPRIKGRFAKRSE 306
                                       9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000215.04E-6138No hitNo description
PROSITE profilePS501198.574138IPR000315B-box-type zinc finger
SMARTSM003360.0027138IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3673481IPR000315B-box-type zinc finger
PfamPF006436.2E-63578IPR000315B-box-type zinc finger
CDDcd000211.05E-83781No hitNo description
SMARTSM003364.2E-83981IPR000315B-box-type zinc finger
PfamPF062031.9E-18262304IPR010402CCT domain
PROSITE profilePS5101716.638262304IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
SSPAAVFCRA DSAYLCLACD SKIHCANKLA SRHQRVWMCE VCEQAPAAVT CKADAAALCV  60
TCDADIHSAN PLAHRHERFP VEPFLDSAES IAKSTSSSFN DAVSTIKNDD ADSLLIPNLN  120
FTSKFVDALD IKPDMYFPEM ESLLEFDYPN PIQNSSSSMD SVVPVQPDPI PPPPVLHQPS  180
HESCFDIDFC RNKLSSSFSY PAQSISQSVS SSSLDVGVVP DGNSFSDISY PFIANVNQNG  240
MDSGVPAPAT VSQATQLTGV DREARVMRYR EKRKNRTFQK TIRYASRKAY AETRPRIKGR  300
FAKRSESETE VMDRIFNSAP GSYIADAQYG VVPTF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462636.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-101COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2P6QTN40.0A0A2P6QTN4_ROSCH; Putative transcription factor C2C2-CO-like family
STRINGXP_004167377.11e-136(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-88CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]