PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00002702_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | E2F/DP | ||||||||
Protein Properties | Length: 252aa MW: 27938.8 Da PI: 9.9179 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 79.4 | 3.3e-25 | 39 | 119 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....keknei 67 r+eksL lltq+f+kl+ +s+ + ++l+e+ak L+ + +++k+RRiYDi+NVL+++nliek ++k+++ FANhyb_icon00002702_a.1.g00001.1 39 RREKSLALLTQNFVKLFVCSTVESISLDEAAKLLLGDvhnasIMRTKVRRIYDIANVLSSMNLIEKthtadTRKPAY 115 689**************************************999***************************9***** PP E2F_TDP 68 rwkg 71 +w g FANhyb_icon00002702_a.1.g00001.1 116 KWLG 119 **87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.9E-24 | 35 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.2E-31 | 39 | 119 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-13 | 41 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-20 | 41 | 119 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
CSQGSDDEEG DESGPATGSQ NENPGANPKS SANSKNDNRR EKSLALLTQN FVKLFVCSTV 60 ESISLDEAAK LLLGDVHNAS IMRTKVRRIY DIANVLSSMN LIEKTHTADT RKPAYKWLGL 120 RGKDAASSAS DESRKRAFGT DITNVSSKRG KVESSTTGKL EAQIQKQHES TVRQRESIVR 180 TVDRNNSEDS REGTKSYQFG PFAPVTIARA GNFNMKKVDW DNFSSTYRPQ YQNQANTGLF 240 RFNFTSGNQQ RP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 5e-17 | 22 | 111 | 138 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301283.1 | 1e-171 | PREDICTED: E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 4e-68 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A2P6P273 | 1e-154 | A0A2P6P273_ROSCH; Putative transcription factor E2F-DP family | ||||
STRING | XP_004301283.1 | 1e-170 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 7e-71 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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