PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002429_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 135aa    MW: 15223.1 Da    PI: 7.5112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002429_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-192071256
                               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                      +y+GVr+++ +g+++AeIrd +++g   r +lg+f ta+eAa+a+++a+ +++g+
  FANhyb_icon00002429_a.1.g00001.1 20 KYRGVRRRP-WGKFAAEIRDSTKQG--VRLWLGTFNTAKEAARAYDKAAFSMRGP 71
                                      8********.**********55444..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-352084IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-232079IPR016177DNA-binding domain
CDDcd000189.13E-302078No hitNo description
PfamPF008473.4E-142070IPR001471AP2/ERF domain
PROSITE profilePS5103223.3142078IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-312079IPR001471AP2/ERF domain
PRINTSPR003678.0E-112132IPR001471AP2/ERF domain
PRINTSPR003678.0E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MKEDTSKSNK VEEEGQKYVK YRGVRRRPWG KFAAEIRDST KQGVRLWLGT FNTAKEAARA  60
YDKAAFSMRG PLAILNFPSE HGFVVADSAA ATSSCFTASS STLHNTLMRT EPGKEVFVFE  120
YLDDKVLEEL LDFEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-33151269114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292207.12e-92PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q8TD921e-94A0A3Q8TD92_FRAAN; Transcription factor ERF81
STRINGXP_004292207.17e-92(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]