PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_icon00001220_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 28444.3 Da PI: 4.6077 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9.1e-08 | 27 | 49 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 W+ Ia++++ gRt++++k++w++ FANhyb_icon00001220_a.1.g00001.1 27 VWSQIAARLP-GRTDNEIKNFWNS 49 6*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.84E-5 | 28 | 48 | No hit | No description |
Pfam | PF00249 | 1.0E-5 | 28 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-11 | 28 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.226 | 28 | 51 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.39E-6 | 28 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTSISRVFSS GGGNIPTWNP FLEILPVWSQ IAARLPGRTD NEIKNFWNSA LKKRLKNNIS 60 TSTSSPDESD HSSEPNVNIG GAIRPFIPAM HNEQDMLMSM MYIDSSTSSS SASMHVINNS 120 TFEPSFSVLD SSSLLNYVDH TGSTQLPEGQ YGDYGNYLEA GHKMGIEGDH LCLPPLETSR 180 RNLTENKNGQ VVDKISNNNI NHFHNNNSNN CFINTASNMS FKVDDGDIFG QAEAGGSLRV 240 GEEWDFEGFM QDISCFLS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308219.1 | 1e-169 | PREDICTED: transcription factor MYB46 | ||||
TrEMBL | A0A2P6S7H6 | 1e-112 | A0A2P6S7H6_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004308219.1 | 1e-168 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 2e-13 | myb domain protein 83 |