PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00001194_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

YABBY

Protein Properties

Length: 85aa MW: 8763.83 Da PI: 7.7453

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00001194_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	34.6	6.5e-11	7	43	25	60
YABBY 25 svPstsl.fkvvtvrCGhCtsllsvnlakasqllaae 60 + P t++ +vvtvrCGhC++llsvn+ as + + FANhyb_icon00001194_a.1.g00001.1 7 NGPLTAVtTTVVTVRCGHCANLLSVNIGAASLQYHSI 43 556665515789***************9998554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.5E-9	14	45	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
VSVPAFNGPL TAVTTTVVTV RCGHCANLLS VNIGAASLQY HSITPSSTAA AAAAASPHPH 60 PHTQHYLSHP NIFTHQTSLI NSEIG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024161235.1	2e-30	putative axial regulator YABBY 2
TrEMBL	A0A2P6QEV7	5e-29	A0A2P6QEV7_ROSCH; Putative transcription factor C2C2-YABBY family
STRING	XP_004291524.1	4e-20	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112