PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00001122_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HB-other

Protein Properties

Length: 286aa MW: 32075.1 Da PI: 11.2836

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00001122_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.9	1.4e-12	6	57	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + t+ ql++Le+++e+++yps++++e A+ gLt +qV+ WF rR +ek+ FANhyb_icon00001122_a.1.g00001.1 6 KKTSLQLQALESFYEEEKYPSRTAMECHATVFGLTYKQVRGWFVERRRREKR 57 56899**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.1E-5	1	62	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.345	1	58	IPR001356	Homeobox domain
CDD	cd00086	1.25E-5	3	48	No hit	No description
SuperFamily	SSF46689	3.89E-12	5	61	IPR009057	Homeodomain-like
Pfam	PF00046	6.3E-10	6	57	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.2E-12	8	58	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEKTQKKTSL QLQALESFYE EEKYPSRTAM ECHATVFGLT YKQVRGWFVE RRRREKRKRT 60 AGELLSGRNG VGVAATRVAK RSDSSQRTKA AASGLKCKKK AIKARIQRLR NPDYLLKKVF 120 RKDGPPIAVE FDALPSRALW KSTDSQNGLP TCKVKQIAPK RGTVTTCSVT SNEELNSSAP 180 RKRHGAGKDL MTMRKHGAGK DLMTVRRHNG GKDLMKMKQH GCGKDLMTMK KHGGGKGLMT 240 VWRANNPDAD ARDFLVDMGL ANGEVTHVSR KPQTRSRRLQ QQKSVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	54	ERRRRE
2	50	55	RRRREK
3	51	57	RRREKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303777.1	1e-167	PREDICTED: uncharacterized protein LOC101301509 isoform X2
Refseq	XP_011467497.1	1e-167	PREDICTED: uncharacterized protein LOC101301509 isoform X1
TrEMBL	A0A2P6RZC9	1e-152	A0A2P6RZC9_ROSCH; Putative transcription factor & chromatin remodeling DDT family
STRING	XP_004303777.1	1e-166	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6118	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	3e-22	Homeodomain-like transcriptional regulator