PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001007_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 400aa    MW: 42795.2 Da    PI: 6.3118
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001007_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS51.91.5e-1677154380
                              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                        lLl+cAe+v+ ++l+ a+ lL ++sel+sp g++ +R+ ayf+ AL++r+ +s+ ++y+ l++++ +  +s++ ++
  FANhyb_icon00001007_a.1.g00001.1  77 GLLLQCAECVAMDNLHDASDLLPEISELSSPFGSSPERVGAYFAHALQTRVISSCLGTYSPLTTKTLTAAQSQRIFN 153
                                       58************************************************************999999777666555 PP

                              GRAS  80 a 80 
                                       a
  FANhyb_icon00001007_a.1.g00001.1 154 A 154
                                       5 PP
2GRAS153.91.5e-47217397186374
                              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                                        e  el++L +++ Ea++V++++  h l+d ++s       +L+ +  l+Pk+++vveq+++h s+sFl rf+eal+
  FANhyb_icon00001007_a.1.g00001.1 217 SEVAELSQLGIRSSEATVVHWMH--HCLYDVTGSDLA----TLRSLSLLRPKLITVVEQDLSH-SGSFLGRFVEALH 286
                                       566789****************9..888877777777....**********************.899********** PP

                              GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                                       yysalfd+l  +l ++s er++vE++l+g ei+n++a  g +r+ + + +e+  e l+++GF+pv+l+ + a+qa+l
  FANhyb_icon00001007_a.1.g00001.1 287 YYSALFDALGDGLNADSLERHMVEQQLFGCEIRNILAVGGPKRTGEVK-VERCGEELKRVGFRPVSLGGNPAAQASL 362
                                       ******************************************998887.9999************************ PP

                              GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                       ll +++++gy++ ee+g+l lgWkd +L+++SaW+
  FANhyb_icon00001007_a.1.g00001.1 363 LLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 397
                                       **********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.3631377IPR005202Transcription factor GRAS
PfamPF035145.1E-1477154IPR005202Transcription factor GRAS
PfamPF035145.2E-45217397IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MLQSLVPQSP IVANPKNPTS SSSSSMKTKR VDRDDPDSAA DDPSSFTTKR PTFSREPTAE  60
PVEPVAEGES AGLKLLGLLL QCAECVAMDN LHDASDLLPE ISELSSPFGS SPERVGAYFA  120
HALQTRVISS CLGTYSPLTT KTLTAAQSQR IFNALQSGSS GQGCSTSWPP GQRRSGQCES  180
PGSDPPPSYS SPQAGGLRTS RAPSACPSSS IRSRAKSEVA ELSQLGIRSS EATVVHWMHH  240
CLYDVTGSDL ATLRSLSLLR PKLITVVEQD LSHSGSFLGR FVEALHYYSA LFDALGDGLN  300
ADSLERHMVE QQLFGCEIRN ILAVGGPKRT GEVKVERCGE ELKRVGFRPV SLGGNPAAQA  360
SLLLGMFPWK GYTLVEENGC LKLGWKDLSL LTASAWQPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-978139825380Protein SCARECROW
5b3h_A1e-978139824379Protein SCARECROW
5b3h_D1e-978139824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467673.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-112SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2P5SSM51e-162A0A2P5SSM5_GOSBA; Uncharacterized protein
STRINGXP_004303941.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.14e-95GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]