PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000657_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family RAV
Protein Properties Length: 252aa    MW: 28884.5 Da    PI: 7.2531
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000657_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-122169155
                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                      s+ykGV   + +grW A+I++      ++r++lg+f  +eeAaka+  a ++++g
  FANhyb_icon00000657_a.1.g00001.1 21 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNGEEEAAKAYNIASLRFRG 69
                                      78****9888.8*********3.....5*********************999987 PP
2B339.97.3e-131561944987
                                       EE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                B3  49 kliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                       +++++ +s++yvltkGW +Fvk++++k+gD+v F+ +++
  FANhyb_icon00000657_a.1.g00001.1 156 RYCFWSSSQSYVLTKGWTRFVKEKKVKAGDVVRFHGSSS 194
                                       6889*******************************6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-152178IPR016177DNA-binding domain
PfamPF008473.4E-72169IPR001471AP2/ERF domain
CDDcd000181.18E-232179No hitNo description
Gene3DG3DSA:3.30.730.102.0E-172278IPR001471AP2/ERF domain
SMARTSM003801.2E-232283IPR001471AP2/ERF domain
PROSITE profilePS5103219.1372277IPR001471AP2/ERF domain
PRINTSPR003676.1E-52334IPR001471AP2/ERF domain
PRINTSPR003676.1E-54359IPR001471AP2/ERF domain
SuperFamilySSF1019361.2E-12138193IPR015300DNA-binding pseudobarrel domain
CDDcd100175.49E-11140190No hitNo description
PfamPF023623.0E-10156199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-12156206IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDLMNCFNEN ASDSNSKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF NGEEEAAKAY  60
NIASLRFRGL DAITNLKQSS LSTTIDDHED ETFFLQSHSK AEIVDMLRKH SYTNELELFK  120
HKNAGKRMKY RDIIHTQKEW LFEKVLTPSD VGRLNRYCFW SSSQSYVLTK GWTRFVKEKK  180
VKAGDVVRFH GSSSMGDDKK LFIECTPRNI DNEVSGYPEV PSPVEEPLMA PVQDHDGVVR  240
LFGVNIESNI VD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-1613920911118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467826.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like
SwissprotQ9C6M55e-70RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3S8T9281e-168A0A3S8T928_FRAAN; Transcription factor RAV5
STRINGXP_008230383.11e-105(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-72RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]