PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | FANhyb_icon00000450_a.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 143aa MW: 15796.8 Da PI: 10.7394 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 34 | 57 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr f + C++G+ C+F+H+ FANhyb_icon00000450_a.1.g00001.1 34 REATCRQFEE-NSCNRGGYCNFMHV 57 6789**9999.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.70.330 | 5.8E-4 | 2 | 29 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 2.21E-5 | 2 | 33 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 2.0E-16 | 14 | 38 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 11.591 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-5 | 34 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-4 | 37 | 56 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 2.0E-16 | 49 | 61 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
KEEDQAAAAL QALQGRFYNG RPIIADFSPV TDFREATCRQ FEENSCNRGG YCNFMHVKLI 60 GRELRRKLYG RYRGFRASRS RSRSRSLSPP RHRRDREGTT GRGIIEGMGG EARIGMTGTE 120 TMGGGDMAVP GGAEPGAGAL WRP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 9e-18 | 1 | 77 | 112 | 188 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300085.1 | 2e-62 | PREDICTED: splicing factor U2af small subunit B | ||||
Refseq | XP_011465001.1 | 2e-62 | PREDICTED: splicing factor U2af small subunit B | ||||
Swissprot | Q9ZQW8 | 2e-39 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | A0A2P2M1R5 | 5e-42 | A0A2P2M1R5_RHIMU; Uncharacterized protein | ||||
STRING | XP_004300085.1 | 6e-62 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21893 | 3 | 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|