PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000411_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 159aa    MW: 18905.2 Da    PI: 9.374
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000411_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-1978131356
                                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                       k+ +++++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k
  FANhyb_icon00000411_a.1.g00001.1  78 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 131
                                       56679************************************************9 PP
2HD-ZIP_I/II114.66e-3777159183
                       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeen 77 
                                       ekk+rls++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yda+++e+
  FANhyb_icon00000411_a.1.g00001.1  77 EKKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDAVSKEK 153
                                       69*************************************************************************** PP

                       HD-ZIP_I/II  78 erLeke 83 
                                       ++L++e
  FANhyb_icon00000411_a.1.g00001.1 154 QKLQDE 159
                                       ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1959135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-2072135IPR009057Homeodomain-like
PROSITE profilePS5007117.0773133IPR001356Homeobox domain
SMARTSM003893.6E-1676137IPR001356Homeobox domain
PfamPF000462.0E-1678131IPR001356Homeobox domain
CDDcd000865.62E-1478134No hitNo description
PRINTSPR000314.3E-5104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000314.3E-5113129IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDWTNTNSRQ GQQQQQHHHL VSRPEPSFGF LYNYNFDPFP HPGTEMKHHQ AMFETPQGSG  60
PSSMERSMMS YGCSSQEKKK RLSTDQLESL ERSFQEEIKL DPDRKMKLSR DLGLQPRQIA  120
VWFQNRRARW KAKQLERLYD ALKQEYDAVS KEKQKLQDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303049.11e-114PREDICTED: putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-44ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P6RBE02e-99A0A2P6RBE0_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004303049.11e-114(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.18e-47homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]