PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000286_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 342aa MW: 36972.2 Da PI: 7.1763

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000286_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	45.6	1.5e-14	1	26	36	61
zf-Dof 36 CrryWtkGGalrnvPvGggrrknkks 61 C+ryWt+GG++rnvPvG+grrknk++ FANhyb_icon00000286_a.1.g00001.1 1 CQRYWTAGGTMRNVPVGAGRRKNKNT 26 ************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-7	1	24	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-8	1	25	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
CQRYWTAGGT MRNVPVGAGR RKNKNTPSQY RHITVSEALP NGRPDVLNGV HHPSLQSNGT 60 VLTFCTDTPL CESMTSVLQL ADKNVQNCTP NGFHKPEGLI IPAYGGGNGD DHSNRSTVTD 120 SNSKEETSKP GPQEPVMQNY PGYPPQIPCF PGAPWPYPWN PAQWSSPVSP PAFCPPGYPM 180 PFYPAAAYFG CAVQGTWNMP WVPRPSSPNQ TAPSSGSNSP TLGKHSRDEN PVKQTSSEEE 240 ETPKEKNAER CLWIPKTLRI DDPGEAARSS IWATLGIKND KADSISSGGL FKAFRSKGDE 300 KNHIAEASPV LQANPAALSS MTPPLYAWEI HPDAEALNGG RG

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

CQRYWTAGGT MRNVPVGAGR RKNKNTPSQY RHITVSEALP NGRPDVLNGV HHPSLQSNGT  60
VLTFCTDTPL CESMTSVLQL ADKNVQNCTP NGFHKPEGLI IPAYGGGNGD DHSNRSTVTD  120
SNSKEETSKP GPQEPVMQNY PGYPPQIPCF PGAPWPYPWN PAQWSSPVSP PAFCPPGYPM  180
PFYPAAAYFG CAVQGTWNMP WVPRPSSPNQ TAPSSGSNSP TLGKHSRDEN PVKQTSSEEE  240
ETPKEKNAER CLWIPKTLRI DDPGEAARSS IWATLGIKND KADSISSGGL FKAFRSKGDE  300
KNHIAEASPV LQANPAALSS MTPPLYAWEI HPDAEALNGG RG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004304291.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	A0A2P6S4E3	0.0	A0A2P6S4E3_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004304291.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-65	cycling DOF factor 2