PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000113_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 367aa    MW: 39984.8 Da    PI: 6.7674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000113_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.3e-183479147
                                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                      rg+W++ Edell ++v+q+G ++W+ Iar ++ gR++k+c++rw + 
  FANhyb_icon00000113_a.1.g00001.1 34 RGSWSPKEDELLTRLVTQFGARNWSVIARGIP-GRSGKSCRLRWCNQ 79
                                      89******************************.***********985 PP
2Myb_DNA-binding47.63.9e-15113151747
                                       HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                   Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                       eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
  FANhyb_icon00000113_a.1.g00001.1 113 EEDRIIVAAHATHGNR-WSIIAKLLP-GRTDNAIKNHWNST 151
                                       9***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8462984IPR017930Myb domain
SMARTSM007174.5E-153382IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-193482IPR009057Homeodomain-like
PfamPF002491.7E-163479IPR001005SANT/Myb domain
SuperFamilySSF466892.36E-273484IPR009057Homeodomain-like
CDDcd001672.68E-143678No hitNo description
SMARTSM007174.7E-1099154IPR001005SANT/Myb domain
PROSITE profilePS5129418.017112156IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-18112153IPR009057Homeodomain-like
CDDcd001671.83E-11112152No hitNo description
PfamPF002491.3E-12113151IPR001005SANT/Myb domain
SuperFamilySSF466892.36E-27124153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MTVPNDAAPP NPAEPGASPP HADEGGEIAA GKVRGSWSPK EDELLTRLVT QFGARNWSVI  60
ARGIPGRSGK SCRLRWCNQL NPGSDSCFCI CIVFVVHSVK KVWNVMECFG ADEEDRIIVA  120
AHATHGNRWS IIAKLLPGRT DNAIKNHWNS TLKRGRKYIP RTRNMKEDSG VERSKTSSEE  180
TVSVGNISSV RTPEGREVFI VDNSSNQNQD SVGVTELKDN STLVAELKED SALCRPVARV  240
SAFSAYNSSN GSVVPRPVPI PGPLVQTSKL NLDFCNSLEG DCNEPMVPLH CGHGCYDRRH  300
GHSGSSLLGP EFIDYEEPPS FSSPEFISCA TDVNNIAWIK SGLENRETIR VAENVASQRF  360
SQGALTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-32331543103C-Myb DNA-Binding Domain
1msf_C2e-32331543103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307600.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A2P6SKZ50.0A0A2P6SKZ5_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004307600.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.15e-76myb domain protein 109