PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462969411

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Nin-like

Protein Properties

Length: 919aa MW: 100695 Da PI: 5.9825

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462969411	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.8	7.7e-27	551	601	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ 462969411 551 EKNFSLDVLRKYFSGSLRDAAVSLGVCPTTLKRICRQHGISRWPSRKINKV 601 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.631	535	621	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-24	554	601	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.77E-24	810	900	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-22	814	896	No hit	No description
PROSITE profile	PS51745	25.629	817	899	IPR000270	PB1 domain
SMART	SM00666	5.3E-22	817	899	IPR000270	PB1 domain
Pfam	PF00564	1.5E-17	818	898	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence Send to blast
MGSSDDPFGG AAMMNFDGYS ELCSPSVADQ IFSLLNDPSA AQQMFAMWSS LGSSPRASGM 60 NQDMLFENCP GPVETVATPS QKINLASPVD TAEVDRVIKD SDEVVPNNSQ LQGSNIIPRS 120 VVGNILADKM LVALSLFRKS LSDGVLAQVW MPVEHNGQVL LSTCEQPFLL DQVLAGYREV 180 SRHFLFSVKE EPGLHLGLPG RVFISGVPEW TSNVLYYSKP EYLRMEHALH HEIRGSLAMP 240 IYDPSKGSCC AVLELVTNTE KTDFDAEMDS AVNLQTTTDR NSQKCMWSPH LQVYSENQKS 300 AFTEILDVLR AICHAHMLPL ALTWVPTSNG IGNGYGVGKD ISIGSESGKA ILRIHESACY 360 VNDTKMQGFL HACAERHLEK GQGIAGRALK SNLPFFSPDI REYSIEDYPL AHHARKFGLH 420 AAVAIRLRST YTGNDDYILE FFLPVNCKGS GEQQMLLNNL SSTMQRICKS LRTVSETEVD 480 NINACSAAMY EHTNECHLRP GNSDSSSQDE QPVTESAFQD LSLVDKRQDM EQEQAQTSTI 540 RVAEKKRNTS EKNFSLDVLR KYFSGSLRDA AVSLGVCPTT LKRICRQHGI SRWPSRKINK 600 VNRSLKKIQT VINSVHGVDR SLQYDPATGS LVPAASLPDK TLFSGCDTLP TPSVGKIMEK 660 KSSPKSEEGF SSPDGCQRES SQLQVPGVRK REGDKFGVLA SDNNGSNIQN ITQRSNSEGA 720 QGPLYPIGVI DSLHTTCYID SSTSLHPSID SIEDQTIGRN SSFVQQADVN MADGHDAKVH 780 THPSTSGMTD SSSGSASSQP TFKGNPGHTL KDRTSPTLTV KATYNGDTVR FKFLPSLGWY 840 NLLEEIAKRF KLATGAFQLK YKDDEDEWVI LANDSDLQEC VDVLDSIGSR NVKLQVRDLP 900 CLISSSGSSS CLQVEAHSS

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence Send to blast

MGSSDDPFGG AAMMNFDGYS ELCSPSVADQ IFSLLNDPSA AQQMFAMWSS LGSSPRASGM  60
NQDMLFENCP GPVETVATPS QKINLASPVD TAEVDRVIKD SDEVVPNNSQ LQGSNIIPRS  120
VVGNILADKM LVALSLFRKS LSDGVLAQVW MPVEHNGQVL LSTCEQPFLL DQVLAGYREV  180
SRHFLFSVKE EPGLHLGLPG RVFISGVPEW TSNVLYYSKP EYLRMEHALH HEIRGSLAMP  240
IYDPSKGSCC AVLELVTNTE KTDFDAEMDS AVNLQTTTDR NSQKCMWSPH LQVYSENQKS  300
AFTEILDVLR AICHAHMLPL ALTWVPTSNG IGNGYGVGKD ISIGSESGKA ILRIHESACY  360
VNDTKMQGFL HACAERHLEK GQGIAGRALK SNLPFFSPDI REYSIEDYPL AHHARKFGLH  420
AAVAIRLRST YTGNDDYILE FFLPVNCKGS GEQQMLLNNL SSTMQRICKS LRTVSETEVD  480
NINACSAAMY EHTNECHLRP GNSDSSSQDE QPVTESAFQD LSLVDKRQDM EQEQAQTSTI  540
RVAEKKRNTS EKNFSLDVLR KYFSGSLRDA AVSLGVCPTT LKRICRQHGI SRWPSRKINK  600
VNRSLKKIQT VINSVHGVDR SLQYDPATGS LVPAASLPDK TLFSGCDTLP TPSVGKIMEK  660
KSSPKSEEGF SSPDGCQRES SQLQVPGVRK REGDKFGVLA SDNNGSNIQN ITQRSNSEGA  720
QGPLYPIGVI DSLHTTCYID SSTSLHPSID SIEDQTIGRN SSFVQQADVN MADGHDAKVH  780
THPSTSGMTD SSSGSASSQP TFKGNPGHTL KDRTSPTLTV KATYNGDTVR FKFLPSLGWY  840
NLLEEIAKRF KLATGAFQLK YKDDEDEWVI LANDSDLQEC VDVLDSIGSR NVKLQVRDLP  900
CLISSSGSSS CLQVEAHSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462969411

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823107.1	0.0	protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2S3I833	0.0	A0A2S3I833_9POAL; Uncharacterized protein
STRING	Pavir.J35714.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-180	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]