PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462969202

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 354aa MW: 38777.1 Da PI: 5.4357

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462969202	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.9	6.1e-10	88	123	7	43
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +Edell + v+++G +W t+ar ++ +R + qc+ r 462969202 88 QEDELLTQMVNKHGLSNWQTVARAIP-NRNALQCRMR 123 7*************************.8888888865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.9E-6	81	130	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.573	87	128	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.99E-9	87	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-9	87	129	IPR009057	Homeodomain-like
Pfam	PF00249	5.3E-8	88	125	IPR001005	SANT/Myb domain
CDD	cd00167	1.41E-8	88	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSDXXXXXAQ RVSEPLPGAE ATHHELDRRC SPPIPLASPG SADACGGFGG GSALSWAVEQ 60 SGDGASRRRV TYHIKLPYIA KMRNRKRQED ELLTQMVNKH GLSNWQTVAR AIPNRNALQC 120 RMRTNYNLKE YWRGPMKRKL DSYLASGLLE QVPDLHDDIS APDSSQSNIP KDSASLSDRK 180 LESPAFPTSP KSKEVCTEQG SDSSEGECSD FTNTKGLSAH SAKASERIMA KSNELATARK 240 KLDFLSTPVE LKVCTAAVSY QRPIPKMEQM NPSAKNISLS DVCHDGPPNV PSGCADMALS 300 EVASDYSNIV PSSETPQQCS LDINDDFASD LLDMSYCDDL MMDFPSFSHI DSFI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSDXXXXXAQ RVSEPLPGAE ATHHELDRRC SPPIPLASPG SADACGGFGG GSALSWAVEQ  60
SGDGASRRRV TYHIKLPYIA KMRNRKRQED ELLTQMVNKH GLSNWQTVAR AIPNRNALQC  120
RMRTNYNLKE YWRGPMKRKL DSYLASGLLE QVPDLHDDIS APDSSQSNIP KDSASLSDRK  180
LESPAFPTSP KSKEVCTEQG SDSSEGECSD FTNTKGLSAH SAKASERIMA KSNELATARK  240
KLDFLSTPVE LKVCTAAVSY QRPIPKMEQM NPSAKNISLS DVCHDGPPNV PSGCADMALS  300
EVASDYSNIV PSSETPQQCS LDINDDFASD LLDMSYCDDL MMDFPSFSHI DSFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462969202

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791248.1	3e-84	transcription factor MYB3R-2-like
TrEMBL	A0A0A9FY27	1e-105	A0A0A9FY27_ARUDO; Uncharacterized protein
STRING	Si017903m	4e-83	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14263	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	2e-09	myb domain protein 3r-4