PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462969103

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

BES1

Protein Properties

Length: 395aa MW: 42194.7 Da PI: 8.4606

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462969103	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	209.1	1.2e-64	55	203	2	148
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqsslk 99 g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+++ +g+sas sp+ss+q 462969103 55 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPpaERHDPIGRSASPSPCSSYQ---- 150 789*********************************************************************99999*************.... PP DUF822 100 ssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148 +sp++sy++sp+sssfps+ s+++i+l + +sl+p+l++ls++ss 462969103 151 ----PSPRASYNPSPASSSFPSSGSSSHITLGGNnyiggvegNSLIPWLKNLSSSSS 203 ....*********************9998899*9*******988655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.6E-70	55	199	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MFSQFTMDTI PYKFSLAFAY PPLATLPLYR ETRSETPSVQ QRNREGSGGG GGGLGGTRVP 60 TWRERENNRR RERRRRAIAA KIFAGLRAYG NYNLPKHCDN NEVLKALCNE AGWTVEPDGT 120 TYRKGCKPPP AERHDPIGRS ASPSPCSSYQ PSPRASYNPS PASSSFPSSG SSSHITLGGN 180 NYIGGVEGNS LIPWLKNLSS SSSFASSSKF PQLQHLYFNG GSISAPVTPP SSSPTRTPRI 240 KTDWENPSVM PPWAGANYAS LPNSQPPSPG HQVAPDPAWL AGFQISSAGP SSPTYSLVAP 300 NPFGIFKETV ASSSRMCTPG QSGTCSPVMG GVPAHHDVQM VDGTPDDFAF GSSSNGNNES 360 PGLVKAWEGE RIHEECASDE LELTLGSSKT RADPS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MFSQFTMDTI PYKFSLAFAY PPLATLPLYR ETRSETPSVQ QRNREGSGGG GGGLGGTRVP  60
TWRERENNRR RERRRRAIAA KIFAGLRAYG NYNLPKHCDN NEVLKALCNE AGWTVEPDGT  120
TYRKGCKPPP AERHDPIGRS ASPSPCSSYQ PSPRASYNPS PASSSFPSSG SSSHITLGGN  180
NYIGGVEGNS LIPWLKNLSS SSSFASSSKF PQLQHLYFNG GSISAPVTPP SSSPTRTPRI  240
KTDWENPSVM PPWAGANYAS LPNSQPPSPG HQVAPDPAWL AGFQISSAGP SSPTYSLVAP  300
NPFGIFKETV ASSSRMCTPG QSGTCSPVMG GVPAHHDVQM VDGTPDDFAF GSSSNGNNES  360
PGLVKAWEGE RIHEECASDE LELTLGSSKT RADPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-25	58	132	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-25	58	132	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-25	58	132	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-25	58	132	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462969103

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813584.1	0.0	protein BZR1 homolog 3
Swissprot	Q5Z9E5	0.0	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A1E5VA88	0.0	A0A1E5VA88_9POAL; Protein BZR1-like protein 3
STRING	Pavir.J12085.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-64	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]