PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462968785 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 24713.9 Da PI: 10.4933 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.9 | 8.4e-12 | 18 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g ++ ++ ++ + + R++k+c++rw +yl 462968785 18 KGLWSPEEDEKLYNHIIRYGVGhySPLLVRSCAPgLQRCGKSCRLRWINYL 68 678**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 74 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 462968785 74 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 118 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-18 | 13 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.466 | 13 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-26 | 16 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-7 | 17 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-10 | 18 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.90E-9 | 21 | 68 | No hit | No description |
PROSITE profile | PS51294 | 24.517 | 69 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-26 | 72 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 74 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-10 | 76 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MGRHPASSGG GVQQKLRKGL WSPEEDEKLY NHIIRYGVGH YSPLLVRSCA PGLQRCGKSC 60 RLRWINYLRP DLKRGSFSQQ EEDAIVGLHE ILGNRWSQIA SHLPGRTDNE IKNFWNSCLK 120 KKLRQRGIDP STHKPISAAA ATSEDQKQPA DGGFIALKQQ QQQQGVDPRR RRKGRSRRAN 180 NGEAPLHWGS DSKIDGYGEA LENKEAIKAV ENGGPGAIRM F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 16 | 123 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 124 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462968785 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111782 | 1e-121 | AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569634.1 | 8e-86 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 2e-68 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | I1HQR2 | 2e-84 | I1HQR2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G47590.1 | 3e-85 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 1e-65 | myb domain protein 55 |