PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462968672 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Whirly | ||||||||
Protein Properties | Length: 249aa MW: 27301.1 Da PI: 10.6348 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 186.8 | 3.6e-58 | 74 | 211 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 v+k+kaal+v++++p+f++l+sg +++r+G+++l++ +a+++rkyd+ kkq falsatev++l++l++ esceffhdp++k+s+eG+v+k+l++ Pl + 462968672 74 VFKGKAALSVHPILPSFSKLESGGSRVSRNGSVMLTFFPAVGQRKYDYTKKQLFALSATEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSLTPLGN 173 9*************************************************************************************************** PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 sG+fvnl+v n+l+k+ +++svP++kaefavlr++l+ 462968672 174 DSGYFVNLTVLNNLQKTTDRLSVPITKAEFAVLRTALS 211 ***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.2E-73 | 62 | 230 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.69E-71 | 65 | 249 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.2E-58 | 74 | 208 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
ALFSSRRSER TRSLLPSPAL ASLSSGHLCG DRQGGGTMLR LSRFLPSASR RGIELKDALW 60 SENSSGRKFA SYTVFKGKAA LSVHPILPSF SKLESGGSRV SRNGSVMLTF FPAVGQRKYD 120 YTKKQLFALS ATEVGSLISL GPAESCEFFH DPSMKSSHEG QVKKSLSLTP LGNDSGYFVN 180 LTVLNNLQKT TDRLSVPITK AEFAVLRTAL SFALPHIMGW DQVLTNHHPA PQASKPRVER 240 PHPDSEWER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-74 | 66 | 222 | 9 | 165 | StWhy2 |
3n1i_A | 1e-74 | 66 | 222 | 9 | 165 | protein StWhy2 |
3n1j_A | 1e-74 | 66 | 222 | 9 | 165 | Protein StWhy2 |
3n1k_A | 1e-74 | 66 | 222 | 9 | 165 | protein StWhy2 |
3n1l_A | 1e-74 | 66 | 222 | 9 | 165 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462968672 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963457 | 1e-157 | EU963457.1 Zea mays clone 262942 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951836.1 | 1e-136 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 5e-75 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A368PHY8 | 1e-134 | A0A368PHY8_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ab00418.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 6e-70 | WHIRLY 2 |