PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462968259
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 767aa    MW: 87929.1 Da    PI: 6.1619
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462968259genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.26.5e-241194190
       FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
               ++Y +YA +vGFsvrk    ks ++    +r +vCs+eg+r++++ k     r+r+etr+gC a++ +k++ +gk++vt+++++HnH+la
  462968259 11 EYYVSYAGDVGFSVRKGWWDKSAKSS-SRSRVYVCSREGFRSNNEAK-----RPRVETRVGCPARIAIKLTPSGKYRVTEFVEDHNHQLA 94
               69*******************95555.99*************98777.....************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-211194IPR004330FAR1 DNA binding domain
PfamPF105512.8E-24190284IPR018289MULE transposase domain
PROSITE profilePS5096610.151457504IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-4477501IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-4479506IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MVFESEEKAY EYYVSYAGDV GFSVRKGWWD KSAKSSSRSR VYVCSREGFR SNNEAKRPRV  60
ETRVGCPARI AIKLTPSGKY RVTEFVEDHN HQLAAPFDIE MMKSQRTLTD VQHGNQNSNI  120
PPGYKNYLRS KSTKDVKPGD LKALMDYFRR MKSENPSFYY AIQVDENDKA ANVFWADAKS  180
IMDYHYFGDV ICFDMIYKVN DLSRPLALFL GMNHHRQMII FGAAFLYDET VESFKWLLET  240
FKVAMCGKHA QIIFTDRSAA LKEALGLTWP GTIHRSCVWQ IYQNTVKSLT DVFGSYEEFT  300
RDLRHCLFDV EDEQEFVNTW NVVMEKYSLK ENEWLIKLYE DRENWALPYI RQIFSGDIKS  360
MLLAENFGTR LEEYLGHDTD LSLFLNFFES SAEKRRQEEM QADYQANQGA PRIPVPLLWQ  420
AANVYTPIIF DLFRKEYELS IGCMVYGCGE FGSLSEYMIT IRNRSKDQLV RFDSSDGTVA  480
CTCKKFENSG LLCCHILKVY ELRNVKEIPL QYFLKRWRKD AKLVTLDETD EFNFDSDTRL  540
SVPGRYAALC RLFYKIAAKA AENIETSALM TGQSEELLSE VEKTLQSTLA DKSSGNSMKD  600
QLTCMAQNEY LLSGNSEAQG STGKKFEVAR RKNDLGSNKR KKARKDIVQP NETVAGPREG  660
NITPGSIHSE PRNASNQFLP DHLMQGHYVL GHNFDLGSSQ NLHDNLNQFD QASSVSTLQQ  720
QPFPGNGQLT QGYPGDMHSL QFVGTNPEMD HQSDDQGQSA IPVWDFL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462968259
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448527.20.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0A9BN260.0A0A0A9BN26_ARUDO; Uncharacterized protein
STRINGSb06g028520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-106FAR1-related sequence 5