PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462968062

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 749aa MW: 83132.5 Da PI: 5.0201

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462968062	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	352.9	4.9e-108	370	740	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +l + cA+av++gd + a +lL ++++++sp+gd++qRla++f+e+L+arla+++se+yk+l +++ts + e l a+kl+ ++ + +++ N++I 462968062 370 NLCIYCAQAVATGDRRSAMELLRQIKQHSSPSGDATQRLAHCFAEGLEARLAGTGSEVYKSLMSKRTS---VMEYLEAYKLYLAACCFRMMAFKFSNKTI 466 56689*******************************************************999999...9************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 + ++g ++vHi+D+++ +G+QWp+Ll++La+R++gpp++RiTg++ p++g + +leetg+rL++ A ++gvpf+f+ +a ++e++++++L+++p+E 462968062 467 FNLIAGRKKVHIVDYGMHYGFQWPNLLRSLADREGGPPEVRITGIDLPQPGfrPAARLEETGRRLSRRACQFGVPFKFHS-IAAKWEMVRVDDLNIDPDE 565 ***********************************************99*************************.799************ PP GRAS 201 alaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +l+Vn +++l +llde +l+s +rd vL+ +++++P+ +++ + +hns+ F++rf ea+ yysa+fd ++a+ pr++e+r vEr l+g ++ nvv 462968062 566 VLIVNGIVHLANLLDEGNDLDSlsPRDVVLNNIRKMQPDAFILFVMNGSHNSPFFVTRFREAMFYYSAMFDIMDATTPRDNEQRLLVERDLFGSAALNVV 665 ************99999988************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg +r+er et+++W+ r ++aG++p+pl+ +a+k ++ +r + + + ++ ++++l+ gWk+r L+++SaW 462968062 666 ACEGLDRVERPETYKQWHVRNQRAGLRPLPLDPEAVKHVRETVRSQYHKDFVIDMDRQWLLEGWKGRVLYAMSAW 740 *******************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.365	342	721	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-105	370	740	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MAALPEESVE PFSPSLFLDL PPTPRPDGGG DGGDPASSDD LVLPYISRML MEDDIDDKFF 60 YQYPDHPVLL QTQEPYAKIL SDAATGSSSS DSSTTNADGG SGSSTLSPSF SSEAPASGDA 120 IWPCDPIELA QLLRSPPCPE MEVALDGFTA DDVSAFLPAQ DGATEGLQKS PTQLGNASSA 180 VDNRAHSPAT SEEETKTKST ANLPSADGDK DTLLSALFSG QNRESMDMLN LAFFKGMEEA 240 KKFLPNNNNL LVGLNSTSGD HLPRDSKVKE TVDETLFSQR SGNGRGRKNR QDLDYLEAET 300 GRNSKLMMRE PEESGEIVDE TVFNGYELCL KEMQGLRIAM GSDAKKNTRK GDRKSGKGRQ 360 STSQVVDLHN LCIYCAQAVA TGDRRSAMEL LRQIKQHSSP SGDATQRLAH CFAEGLEARL 420 AGTGSEVYKS LMSKRTSVME YLEAYKLYLA ACCFRMMAFK FSNKTIFNLI AGRKKVHIVD 480 YGMHYGFQWP NLLRSLADRE GGPPEVRITG IDLPQPGFRP AARLEETGRR LSRRACQFGV 540 PFKFHSIAAK WEMVRVDDLN IDPDEVLIVN GIVHLANLLD EGNDLDSLSP RDVVLNNIRK 600 MQPDAFILFV MNGSHNSPFF VTRFREAMFY YSAMFDIMDA TTPRDNEQRL LVERDLFGSA 660 ALNVVACEGL DRVERPETYK QWHVRNQRAG LRPLPLDPEA VKHVRETVRS QYHKDFVIDM 720 DRQWLLEGWK GRVLYAMSAW VADDSKNFS

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MAALPEESVE PFSPSLFLDL PPTPRPDGGG DGGDPASSDD LVLPYISRML MEDDIDDKFF  60
YQYPDHPVLL QTQEPYAKIL SDAATGSSSS DSSTTNADGG SGSSTLSPSF SSEAPASGDA  120
IWPCDPIELA QLLRSPPCPE MEVALDGFTA DDVSAFLPAQ DGATEGLQKS PTQLGNASSA  180
VDNRAHSPAT SEEETKTKST ANLPSADGDK DTLLSALFSG QNRESMDMLN LAFFKGMEEA  240
KKFLPNNNNL LVGLNSTSGD HLPRDSKVKE TVDETLFSQR SGNGRGRKNR QDLDYLEAET  300
GRNSKLMMRE PEESGEIVDE TVFNGYELCL KEMQGLRIAM GSDAKKNTRK GDRKSGKGRQ  360
STSQVVDLHN LCIYCAQAVA TGDRRSAMEL LRQIKQHSSP SGDATQRLAH CFAEGLEARL  420
AGTGSEVYKS LMSKRTSVME YLEAYKLYLA ACCFRMMAFK FSNKTIFNLI AGRKKVHIVD  480
YGMHYGFQWP NLLRSLADRE GGPPEVRITG IDLPQPGFRP AARLEETGRR LSRRACQFGV  540
PFKFHSIAAK WEMVRVDDLN IDPDEVLIVN GIVHLANLLD EGNDLDSLSP RDVVLNNIRK  600
MQPDAFILFV MNGSHNSPFF VTRFREAMFY YSAMFDIMDA TTPRDNEQRL LVERDLFGSA  660
ALNVVACEGL DRVERPETYK QWHVRNQRAG LRPLPLDPEA VKHVRETVRS QYHKDFVIDM  720
DRQWLLEGWK GRVLYAMSAW VADDSKNFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-43	373	740	9	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462968062

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826966.1	0.0	scarecrow-like protein 30
TrEMBL	A0A3L6PL53	0.0	A0A3L6PL53_PANMI; Uncharacterized protein
STRING	Sb05g027750.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-149	GRAS family protein